Resources
Tools and reading I use
Software, tutorials and articles I've found useful for population genomics, data analysis and fisheries research.
Population genomics & demographic inference
Software and tutorials I use for inferring population history from genetic data.
- Demographic inference software (Yun S. Song lab)people.eecs.berkeley.edu
- GADMA2: demographic inference from genetic data, installation guidegadma.readthedocs.io
- GADMA2: choosing an engine for plotting modelsgadma.readthedocs.io
- momi2 (MOran Models for Inference): introductionmomi2.readthedocs.io
- Demographic inference using the site frequency spectrum with momi2 (RADCamp tutorial)radcamp.github.io
- momi2 issue #29: exception with growth parametersgithub.com
Genomic data & sequencing
- Animal Genome Size Databasegenomesize.com
- What is NGS target enrichment and why is it important?sequencing.roche.com
Research & writing
Data science quick links
- Geodetic CRS: WGS 84 (EPSG:4326)epsg.io
- Global Fishing Watch: updated fishing effort datasetglobalfishingwatch.org
Fisheries & ocean governance
Articles on fisheries in the Western Indian Ocean, the Red Sea and beyond.
- Foreign fleets plundered Somalia’s fishhakaimagazine.com
- EU accused of ‘neocolonial’ plundering of tuna in Indian Oceantheguardian.com
- Some aspects of socio-economic characteristics of the fisheries in the northern Sudanese Red Sea coastresweb2.jhk.adm.fukuoka-u.ac.jp
- Snapshot of Australia’s commercial fisheries and aquacultureagriculture.gov.au
Me elsewhere
- Omar Mahadalle: Ask Me Anythingsomalispot.com